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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G088200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | SBP | ||||||||
Protein Properties | Length: 521aa MW: 56274.4 Da PI: 7.297 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.9 | 5.1e-42 | 169 | 244 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ keyh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Manes.14G088200.1.p 169 CQVYGCNKDLSSSKEYHKRHKVCEIHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 244 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.3E-33 | 164 | 230 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.428 | 166 | 243 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.3E-39 | 167 | 247 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.0E-32 | 169 | 242 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MQSWSYVTGG KGLVSDETIS SSDAIAKSKN ALMGCSFGNN MVVSSQQAID NHGFGELMYQ 60 ELTGKQLIDN SIRATLSSEV GGGKIINPFM VSTNAFSVED ESTSRLSSSV VDSNSKDSSF 120 IDLKLGRFGD PGDAQNSKIS KGGSILSSSE SSVPSKRARL GVNSHTAHCQ VYGCNKDLSS 180 SKEYHKRHKV CEIHSKTAKV IVNGIEQRFC QQCSRFHLLA EFDDGKRSCR KRLAGHNERR 240 RKPQVGIHSA RTERLLQSYN GFATSRLHGS ALTSFICQDL LPTDPLHPEK YGTNNWRRQI 300 KIEDGSEFSL LSSIPVTRSI FGESTNRYPH ELGGSNSDSR SLIQDISLGN EHLTAFDTVA 360 TIQGLSGITS SSCALSLLSS QSHNYSSHSA EISMACPVVV TGNNTHYSVT QISEKLTGVS 420 SQASTSGVPN KFSSSGASSA EGSHLGSILM SDGSDAINFD ISDGIYQGSN FMNAKHHLPC 480 EDGTTINLLE LSSQLQRVES QKQSMQAKQE NDAFCWPHIT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-30 | 169 | 242 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 4e-31 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 4e-31 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080418.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 | ||||
TrEMBL | A0A067K5H8 | 0.0 | A0A067K5H8_JATCU; Uncharacterized protein | ||||
STRING | VIT_17s0000g05020.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 9e-46 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G088200.1.p |